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	<title>Archetype &#187; Open access</title>
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	<description>Ant reconstruction one homology at a time</description>
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		<title>New open access journal in Evolutionary Biology</title>
		<link>http://roberto.kellerperez.com/2009/03/new-open-access-journal-in-evolutionary-biology/</link>
		<comments>http://roberto.kellerperez.com/2009/03/new-open-access-journal-in-evolutionary-biology/#comments</comments>
		<pubDate>Wed, 25 Mar 2009 16:56:45 +0000</pubDate>
		<dc:creator>Roberto Keller</dc:creator>
				<category><![CDATA[Publishing]]></category>
		<category><![CDATA[Science]]></category>
		<category><![CDATA[Open access]]></category>

		<guid isPermaLink="false">http://roberto.kellerperez.com/?p=664</guid>
		<description><![CDATA[I received some word about an upcoming  open access journal called Trends in Evolutionary Biology. I have to confess that by the journal&#8217;s name and cover design I initially thought, with excitement, that it was a new open access experiment by Cell Press, publisher of the high-end and successful family of &#8220;Trends&#8221; journals. I was [...]]]></description>
			<content:encoded><![CDATA[<p><img class="alignleft size-full wp-image-666" title="Trends in Evolutionary Biology" src="http://roberto.kellerperez.com/wp-content/uploads/2009/03/trendsinevolbiol.jpg" alt="Trends in Evolutionary Biology" width="214" height="302" />I received some word about an upcoming  open access journal called <a href="http://www.pagepress.org/journals/index.php/eb/index">Trends in Evolutionary Biology</a>.</p>
<p>I have to confess that by the journal&#8217;s name and cover design I initially thought, with excitement, that it was a new open access experiment by <a href="http://www.cell.com/">Cell Press</a>, publisher of the high-end and successful family of &#8220;<a href="http://www.trends.com/">Trends</a>&#8221; journals. I was particularly intrigued since Cell Press already publishes <a href="http://www.sciencedirect.com/science/journal/01695347">Trends in Ecology and Evolution</a> or TREE as it is called inside the cool geek<sup class='footnote'><a href='#fn-664-1' id='fnref-664-1'>1</a></sup> circle of evolutionary biologists.</p>
<p>It turns out to be a journal published by <a href="http://www.pagepress.org/">PAGEPress</a>, located in Pavian, Italy. PAGEPress seem to be starting a whole series of titles in medicine and biology.</p>
<p>The journal description is a little odd though:</p>
<blockquote><p>Trends in Evolutionary Biology is a new Open Access journal concerned with the origin of species from a common descent and descent of species, as well as their modifcation[sic], multiplication and diversity over time.</p></blockquote>
<p><span id="more-664"></span>I also feel that they tried too hard in their scope description to include the term <em>molecular</em> as a selling factor (no pun intended):</p>
<blockquote><p>Trends in Evolutionary Biology is a new, Open Access, international peer-reviewed journal that considers articles about all aspects of molecular and non-molecular evolution of all organisms.</p></blockquote>
<p>Odd wording aside, it is still too early to asses this publication since they are still on the initial editor building phase. But, as an open access project, it is worth keeping an eye on its development and give the journal the benefit of the doubt.</p>
<div class='footnotes'>
<div class='footnotedivider'></div>
<ol>
<li id='fn-664-1'>Please excuse the contradiction. <span class='footnotereverse'><a href='#fnref-664-1'>&#8617;</a></span></li>
</ol>
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		<item>
		<title>Open access is good for us</title>
		<link>http://roberto.kellerperez.com/2009/02/open-access-is-good-for-us/</link>
		<comments>http://roberto.kellerperez.com/2009/02/open-access-is-good-for-us/#comments</comments>
		<pubDate>Fri, 20 Feb 2009 14:27:49 +0000</pubDate>
		<dc:creator>Roberto Keller</dc:creator>
				<category><![CDATA[Databases]]></category>
		<category><![CDATA[Publishing]]></category>
		<category><![CDATA[Science]]></category>
		<category><![CDATA[antbase.org]]></category>
		<category><![CDATA[Donat Agosti]]></category>
		<category><![CDATA[Open access]]></category>

		<guid isPermaLink="false">http://roberto.kellerperez.com/?p=492</guid>
		<description><![CDATA[A paper published in today&#8217;s Science Magazine1 shows that citation of scientific papers increases as journals switch to allow free and unrestrictive access of their content online. This seemingly intuitive result becomes interesting when paired with the observation that open access has a great positive impact in developing world participation in global science. The authors [...]]]></description>
			<content:encoded><![CDATA[<p>A paper published in <a href="http://www.sciencemag.org/cgi/content/abstract/323/5917/1025">today&#8217;s Science Magazine</a><sup class='footnote'><a href='#fn-492-1' id='fnref-492-1'>1</a></sup> shows that citation of scientific papers increases as journals switch to allow free and unrestrictive access of their content online. This seemingly intuitive result becomes interesting when paired with the observation that open access has a great positive impact in developing world participation in global science.</p>
<p><span id="more-492"></span></p>
<p>The authors highlight that the effects of open access are stronger for publications within the natural science. The explanation is that in our field, compared to physics or social sciences, it is rare that one can get preprints through freely accessible databases maintained for that specific purpose. From my own experience with the publishing dynamics in biology,  I was very surprised to see how many preprints in topics related to philosophy of biology one can get from <a href="http://philpapers.org/">PhilPapers</a>, an online database for philosophy that just went public on January 28, 2009! Let me stress the word <em>preprint</em> here. In the narrow field of ant taxonomy it almost never happens that authors submit their papers to <a href="http://antbase.org/">antbase.org</a> for example, a database created for that purpose, even after they have been <em>published</em>.</p>
<p>But the main point of this paper is that the influence of open access was also stronger in the developing world, where individual scientists may struggle to get access to relevant publications through their funding strap host institutions. This result puts more sound into the argument that Donat Agosti, creator of antbase.org, has been putting forward- biodiversity is greatest in the developing Southern Hemisphere and we will all benefit the most from facilitating local conservation related science by making the necessary data available without restrictions. Keeping access to taxonomic descriptions restricted is akin to imposing a copyright on species<sup class='footnote'><a href='#fn-492-2' id='fnref-492-2'>2</a></sup>.</p>
<p>Now, you won&#8217;t be able to read the full article unless you have a subscription to <a href="http://www.sciencemag.org/magazine.dtl">Science </a>which is, I think, a delicious irony.</p>
<p><strong>References</strong></p>
<div class='footnotes'>
<div class='footnotedivider'></div>
<ol>
<li id='fn-492-1'>Evan, JA and J. Reimer. Open Access and Global Participation in Science. <em>Science</em> 20 February 2009: Vol. <strong>323</strong>. no. 5917, p. 1025 | <a href="http://www.sciencemag.org/cgi/content/abstract/323/5917/1025">DOI: 10.1126/science.1154562</a> <span class='footnotereverse'><a href='#fnref-492-1'>&#8617;</a></span></li>
<li id='fn-492-2'>Agosti, D. Biodiversity data are out of local taxonomists&#8217; reach. <em>Nature</em> <strong>439</strong>, 392 (26 January 2006) | <a href="http://www.nature.com/nature/journal/v439/n7075/pdf/439392a.pdf">doi:10.1038/439392a</a> <span class='footnotereverse'><a href='#fnref-492-2'>&#8617;</a></span></li>
</ol>
</div>
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		<title>The worst hangover I ever had</title>
		<link>http://roberto.kellerperez.com/2008/12/the-worst-hangover-i-ever-had/</link>
		<comments>http://roberto.kellerperez.com/2008/12/the-worst-hangover-i-ever-had/#comments</comments>
		<pubDate>Tue, 16 Dec 2008 16:35:52 +0000</pubDate>
		<dc:creator>Roberto Keller</dc:creator>
				<category><![CDATA[Humor]]></category>
		<category><![CDATA[Publishing]]></category>
		<category><![CDATA[Science]]></category>
		<category><![CDATA[Open access]]></category>

		<guid isPermaLink="false">http://roberto.kellerperez.com/?p=143</guid>
		<description><![CDATA[I did my undergraduate studies in Biology at UNAM in Mexico City. While this institution holds the best science libraries in the country, there was always the odd paper I couldn&#8217;t find, especially when it came to insect taxonomy with its plethora of obscure journals. Add to this that electronic journals had yet to come [...]]]></description>
			<content:encoded><![CDATA[<p>I did my undergraduate studies in Biology at <a href="http://www.unam.mx/">UNAM</a> in Mexico City. While this institution holds the best science libraries in the country, there was always the odd paper I couldn&#8217;t find, especially when it came to insect taxonomy with its plethora of obscure journals. Add to this that electronic journals had yet to come into existence (it&#8217;s not that I am old, they are really a very recent phenomenon).</p>
<p>Back then, getting papers in the subject of one&#8217;s interest consisted in meticulously thumbing  through the heavy telephone books for animals called <a href="http://www.thomsonreuters.com/products_services/scientific/Zoological_Record">Zoological Records</a>*, writing down some potentially useful references, and filling a petition for copies at a special place in campus that dealt with international inter-library loans. After that, you only had to wait a couple of weeks to get photocopies of some papers that were not quite what you were looking for. It felt like I was doing some serious research nevertheless.<span id="more-143"></span></p>
<p>All this changed when I arrived to <a href="http://www.cornell.edu/">Cornell University</a> in the U.S. to pursue a Ph.D. in Entomology. Cornell has the best library for entomology in the Americas, and with its rare book collection it rivals some of the bests in Europe. I went from having a modest access to scientific literature to having anything I could think off. Occasional Papers of the Southwester Entomological Station? Sure, we have it, no problem. It was like a never ending cocktail party with open bar.</p>
<p>And that was when my thirst for scientific papers began. It started as an innocent activity.  Social reading at first, a couple of papers a week in discussion groups and lab meetings. It quickly changed to reading articles by myself, anytime, anywhere. Soon I had already went through a chapter in a edited book and some meetings proceedings before lunchtime.</p>
<p>I inevitably became a regular of the entomology library, spending countless hours chugging away one monographic revision after another:</p>
<p>- I think you have had enough for today Mr. Keller.</p>
<p>- Huh? What time is it? I lost track of time&#8230;</p>
<p>- It&#8217;s closing time. You can leave those books on the desk, I&#8217;ll take care of them. Do you want me to call you a taxi?</p>
<p>- No. It&#8217;s O.K. Marty, I&#8217;ll take the campus shuttle. See you in the morning I guess.</p>
<p>I photocopy everything at first, not knowing where will I end up after graduation. But soon journals went electronic, <a href="http://www.jstor.org/">JSTOR</a> digitized back issues and, for ants, Donat Agosti compiled all taxonomic publications since Linnaeus and uploaded the pdfs to <a href="http://antbase.org/">antbase.org</a>. No need to carry all that paper around. And the best of it, all these papers accessible online at a mouse click. 24 hour long happy hour.</p>
<p>My reckless, addictive behavior continued as I moved to the <a href="http://www.amnh.org/">American Museum of Natural History</a> to continue my dissertation research. The library of the AMNH also has a substantial and comprehensive collection and they have been pioneers in all manners digital. I graduated last summer and haven&#8217;t been at the AMNH for some time now, but I kept accessing the library and its online journal subscriptions remotely.</p>
<p>All this changed a little more than two weeks ago. I received and automatically generated message telling me that my AMNH account was about to expire in two days unless renew! Panic. This is the account I use to access the digital library. Worst still, the message came during Thanksgiving weekend, so there was no one I could contact to prevent this catastrophic event from happening.</p>
<p>And so it did. It all suddenly came to an abrupt stop. Involuntary <a href="http://en.wikipedia.org/wiki/Cold_turkey">cold turkey</a>. One day I was carelessly reading about the thoracic morphology of Archostematal beetles, the next day I needed to &#8220;log in or make a payment in order to read this story in full.&#8221; For the first time after all my years as a graduate student and postgraduate time I woke up feeling sick and withdrawn. My head felt like it was about to explode. I reached for the Internet in vain, as even antbase.org couldn&#8217;t help me since most of the recent articles about ant taxonomy are still published in copyrighted journals.</p>
<p>During the first week without access I tried to ease the anxiety by going through the free online abstracts. Some journals even let you read the first page without a subscription! But I soon realized that it was like trying to get drunk by sipping wine samples from the promotional stand in the liquor store. The employee has just so much patience.</p>
<p>I received <a href="http://www.nature.com/nature/index.html">Nature</a>&#8216;s table of content in my e-mail. I was afraid to open the message. What if there is a paper, letter or editorial comment that interests me? I knew I wouldn&#8217;t be able to read the full article. I decided it was better not to know for now. If there was something truly important, I thought, I&#8217;ll surely read about it for free in the <a href="http://www.nytimes.com/pages/science/index.html">Science</a> section of the New York Times online.</p>
<p>By the end of the second week, in desperation, I reached a new low. I searched for some old papers on molecular systematics I had stored in my computer&#8217;s hard drive and read through the <a href="http://en.wikipedia.org/wiki/PCR">PCR</a> protocols, trying to squeeze the last drops of information out of them. It made me feel disgusted. I was afraid someone was going to enter through the door and find me doing that, how embarrassing.</p>
<p>Everything is alright now. I contacted the secretary of my department at the AMNH and she kindly agreed to fill out the appropriate form and send it to IT department to have my account reactivated. The headaches and dizziness are gone. After what seems to me like the worst hangover I ever had, I still wonder, however, how does an individual outside of the institution can keep up-to-date on primary scientific literature, let alone do even the most basic research? Lets hope the <a href="http://en.wikipedia.org/wiki/Open_access">open access</a> moment keeps its momentum and we find ways of making the results from scientific research widely available while keeping publishers afloat.</p>
<hr /><small>* The library at the Institute of Biology of the university had already acquire a CD version of Zoological Records, but it required an appointment to use, and you were only allowed up to three keywords that were typed in for you by the person in charge of the computer with the amazing double CD-ROM. The results from the query were then sent to the printer. You were charged by the page.</small></p>
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